sddb.TableAdapter

class sddb.TableAdapter(*args, **kwargs)

Per-table counterpart of TaskAdapter, used by SpatialDataCohort.to_anndata().

Each member’s table is checked and mapped into a shared space (genes, QC, …) as it is read, before concatenation. Any issue from validate_meta or validate skips the member; the reasons land in uns["sddb"]["dropped"] of the result.

__init__(*args, **kwargs)

Methods

__init__(*args, **kwargs)
build(adata, row)	Map the table into the task's space; None drops the member (e.g. nothing left after QC).
requirements()	Declare what to read, e.g. {"elements": ("X", "obs", "var")}; {} reads the whole table.
validate(adata, row)	Authoritative check on the table as read.
validate_meta(row)	Cheap check on the member's catalog row, before its table is read.

Attributes

name
version